<!-- VSPLIT cloning Luminance... -->
<!-- VSPLIT omitting +Cone from Luminance2 and adding new recep instead. -->
<!-- Connecting +Rh2 cone to LWS cone - SWS cone -->
<!-- Connecting +LWS cone to Rh2 cone - SWS2 cone -->
<!-- Connecting -Rh2 cone to Rh2 cone - SWS2 cone -->
<!-- UNKNOWN OPCODE CONNDHGOPP in `finetune` -->
<!-- VSPLIT cloning Luminance (photopic)... -->
<!-- VSPLIT omitting +Double cone from Luminance (photopic)2 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue... -->
<!-- VSPLIT omitting +Double cone from Yellow-Blue2 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green... -->
<!-- VSPLIT omitting +Double cone from Red-Green2 and adding new recep instead. -->
<!-- DELOPP Luminance (photopic)2 -->
<!-- Connecting +LWS cone to Yellow-Blue -->
<!-- DELOPP Yellow-Blue2 -->
<!-- DELOPP Double cone principal - Double cone accessory -->
<!-- DELOPP Wideband cone - Red cone -->
<!-- Connecting -Vio/UV cone to Yellow-Blue -->
<!-- Vio/UV cone acuity times 0.25568181818182 is now 11.25. -->
<!-- Rod acuity times 0.25568181818182 is now 5.625. -->
<!-- Double cone accessory acuity times 0.25568181818182 is now 2.25. -->
<!-- Green 2 cone acuity times 0.25568181818182 is now 2.25. -->
<!-- Red cone acuity times 0.25568181818182 is now 2.25. -->
<!-- Double cone principal acuity times 0.25568181818182 is now 2.25. -->
<!-- Green 1 cone acuity times 0.25568181818182 is now 2.25. -->
<!-- Wideband cone acuity times 0.25568181818182 is now 2.25. -->
<!-- Luminance (photopic) (643) has +Double cone accessory -->
<!-- oppoacup 2.25 from Double cone accessory -->
<!-- Luminance (photopic) (643) has +Double cone principal -->
<!-- Luminance (photopic): Array
(
    [0] => 0
)
 -->
<!-- Luminance (photopic) mode = 0 -->
<!-- Luminance (photopic) acuity is 2.25 based on +2.25, -0 -->
<!-- Luminance (scotopic) (10001) has +Rod -->
<!-- oppoacup 5.625 from Rod -->
<!-- Luminance (scotopic): Array
(
    [0] => 1
)
 -->
<!-- Luminance (scotopic) mode = 1 -->
<!-- Luminance (scotopic) acuity is 5.625 based on +5.625, -0 -->
<!-- Yellow-Blue (10003) has +Green 2 cone -->
<!-- oppoacup 2.25 from Green 2 cone -->
<!-- Yellow-Blue (10003) has +Red cone -->
<!-- Yellow-Blue (10003) has +Green 1 cone -->
<!-- Yellow-Blue (10003) has +Wideband cone -->
<!-- Yellow-Blue (10003) has -Vio/UV cone -->
<!-- oppoacum 11.25 from Vio/UV cone -->
<!-- Yellow-Blue: Array
(
    [0] => 0
)
 -->
<!-- Yellow-Blue mode = 0 -->
<!-- Yellow-Blue acuity is 11.25 based on +2.25, -11.25 -->
<!-- deleted Blue-UV no plusreceps -->
<!-- deleted Red-Green no plusreceps -->
<!-- Red-Green (106390) has +Red cone -->
<!-- oppoacup 2.25 from Red cone -->
<!-- Red-Green (106390) has -Green 2 cone -->
<!-- oppoacum 2.25 from Green 2 cone -->
<!-- Red-Green (106390) has -Green 1 cone -->
<!-- Red-Green: Array
(
    [0] => 0
)
 -->
<!-- Red-Green mode = 0 -->
<!-- Red-Green acuity is 2.25 based on +2.25, -2.25 -->
<!-- Green 1 cone - Green 2 cone (106710) has +Green 1 cone -->
<!-- oppoacup 2.25 from Green 1 cone -->
<!-- Green 1 cone - Green 2 cone (106710) has -Green 2 cone -->
<!-- oppoacum 2.25 from Green 2 cone -->
<!-- Green 1 cone - Green 2 cone: Array
(
    [0] => 0
)
 -->
<!-- Green 1 cone - Green 2 cone mode = 0 -->
<!-- Green 1 cone - Green 2 cone acuity is 2.25 based on +2.25, -2.25 -->
<!-- Wideband-Double cones (106720) has +Wideband cone -->
<!-- oppoacup 2.25 from Wideband cone -->
<!-- Wideband-Double cones (106720) has -Double cone accessory -->
<!-- oppoacum 2.25 from Double cone accessory -->
<!-- Wideband-Double cones (106720) has -Double cone principal -->
<!-- Wideband-Double cones: Array
(
    [0] => 0
)
 -->
<!-- Wideband-Double cones mode = 0 -->
<!-- Wideband-Double cones acuity is 2.25 based on +2.25, -2.25 -->
<!-- Opp Luminance (photopic) pl/ml ranges: 525, 0 -->
<!-- Opp Luminance (scotopic) pl/ml ranges: 471, 0 -->
<!-- Opp Yellow-Blue pl/ml ranges: 575, 378 -->
<!-- Opp Red-Green pl/ml ranges: 635, 554 -->
<!-- Opp Green 1 cone - Green 2 cone pl/ml ranges: 578, 536 -->
<!-- Opp Wideband-Double cones pl/ml ranges: 552, 454 -->
<!-- yellow at 575 nm. -->
<!-- blue at 345 nm. -->
<!-- red at 635 nm. -->
<!-- green at 554 nm. -->
<!-- green1cone at 578 nm. -->
<!-- green2cone at 536 nm. -->
<!-- wideband at 552 nm. -->
<!-- doublecones at 447 nm. -->
<!-- Photopic: 0 [, Wideband-Double cones, Orange-Green, Green 1 cone - Green 2 cone, Lime-UV, ] -->
<!-- Scotopic: 1 [, ] -->
<html>
<head> 
<meta charset="UTF-8">
<title>AVIAN - Bobolink (Dolichonyx oryzivorus)</title>
<link rel="stylesheet" type="text/css" href="style/avian.css">
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var urlparams = ['id=207',];

function choosePolymorph(recep,idx)
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    var url='species.php?';
    for (var i=0; i<urlparams.length; i++)
    {
        if (urlparams[i].substr(0,4)                   // Assuming no polymorphisms of 10 or more genes.
            != 'pm'+recep+'=')
           url += urlparams[i] + '&';
    }
    url += 'pm'+recep+'='+idx;
    
    window.location.href = url;
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<div>
<h1 id="logo">
<a href='index.php'><img align="left" src="img/logo.png"><span class="red">A</span><span class="green">V</span><span class="blue">I</span><span class="purple">A</span><span class="orange">N</span></a></h1>
<h4 id="subtitle">Animal Vision Interactive Analyzer</h4>
</div>

<div id="menu">

<ul>
	<li>Major Taxa
		<ul>
			<li><a href="index.php?node=0&id=207">Animalia</a></li>
<li><a href="index.php?node=26&id=207">Chelicerata</a></li>
<li><a href="index.php?node=34&id=207">Eumalacostraca</a></li>
<li><a href="index.php?node=33&id=207">Stomatopoda</a></li>
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</ul><ul>
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	<li>Recents
		<ul>
			<li><a href="species.php?id=207">Bobolink&nbsp;(Dolichonyx&nbsp;oryzivorus)</a></li>
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</div>


<span id="opfisehciet"><br><br>&nbsp;</span>

</div>

<br><br><br>
<!-- Luminance (photopic): plmax 450(525); zero 0; mlmax 0(0) -->
<!-- Luminance (scotopic): plmax 502(471); zero 0; mlmax 0(0) -->
<!-- Orange-Green: plmax 606(635); zero 587; mlmax 567(554) -->
<!-- Green 1 cone - Green 2 cone: plmax 570(578); zero 557; mlmax 532(536) -->
<!-- Wideband-Double cones: plmax 566(552); zero 487; mlmax 450(447) -->
<!-- Lime-UV: plmax 567(575); zero 447; mlmax 374(345) -->
<div id="specieshdr">
<h3>Bobolink (<i>Dolichonyx oryzivorus</i>)</h3>

<p><!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '23' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '20' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '19' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '419' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '5' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '402' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '159' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '478' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '1' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '0' -->
Containing taxa: <a href="index.php?node=0">Animalia</a> &raquo; <a href="index.php?node=1">Chordata</a> &raquo; <a href="index.php?node=478">Osteichthyes</a> &raquo; <a href="index.php?node=159">Sarcopterygii</a> &raquo; <a href="index.php?node=402">Tetrapoda</a> &raquo; <a href="index.php?node=5">Diapsida</a> &raquo; <a href="index.php?node=419">Archosauria</a> &raquo; <a href="index.php?node=19">Aves</a> &raquo; <a href="index.php?node=20">Neoaves</a> &raquo; <a href="index.php?node=23">Passeriformes</a> &raquo; <a href="index.php?node=220">Icteridae</a></p>


</div>

<div id="opsinopp">
<div id="opsins">
Photoreceptors:
<table cellpadding="0" cellspacing="0" width="503">
    <tr class="tblheader">
        <td width=40%>Receptor</td>
        <td width=20%>Opsin&nbsp;&lambda;max</td>
        <td width=20%>Filter&nbsp;&lambda;max</td>
        <td width=20%>Filter&nbsp;&lambda;50%</td>
        <td width=20%>Recep.&nbsp;&lambda;max</td>
    </tr>
<tr><td nowrap>Red cone</td><td>566nm</td><td>557nm</td><td>589nm</td><td>602nm</td></tr>
<tr><td nowrap>Green 1 cone</td><td>505nm</td><td>536nm</td><td>561nm</td><td>568nm</td></tr>
<tr><td nowrap>Wideband cone</td><td>566nm</td><td>411nm</td><td>431nm</td><td>566nm</td></tr>
<tr><td nowrap>Double cone principal</td><td>566nm</td><td>411nm</td><td>431nm</td><td>566nm</td></tr>
<tr><td nowrap>Green 2 cone</td><td>509nm</td><td>502nm</td><td>520nm</td><td>532nm</td></tr>
<tr><td nowrap>Rod</td><td>502nm</td><td>&nbsp;</td><td>&nbsp;</td><td>502nm</td></tr>
<tr><td nowrap>Double cone accessory</td><td>403nm</td><td>421nm</td><td>445nm</td><td>450nm</td></tr>
<tr><td nowrap>Vio/UV cone</td><td>372nm</td><td>&nbsp;</td><td>&nbsp;</td><td>374nm</td></tr>
</table>

<!-- acria oxtu -->
</div>

<br><br>

<div id="opponents">
Opponent processes:
<table cellpadding="0" cellspacing="0" width="503">
    <tr class="tblheader">
        <td width=40%>Description</td>
        <td width=25%>(+) Terminus</td>
        <td width=25%>(-) Terminus</td>
        <td width=10%>Mode</td>
    </tr>
<tr>
            <td valign=top>Luminance (photopic)<br>
			            <!-- : 0.572837251806 - 1 -->
            </td>
            <td valign=top style="background-color: #111; color: #ffffff;">Double cone accessory<br>Double cone principal</td>
            <td valign=top style="background-color: #111; color: #000000;">&nbsp;</td>
            <td>Photopic</td>
          </tr>
        <tr>
            <td valign=top>Luminance (scotopic)<br>
			            <!-- : 1.2433584470694 - 1 -->
            </td>
            <td valign=top style="background-color: #111; color: #ffffff;">Rod</td>
            <td valign=top style="background-color: #111; color: #000000;">&nbsp;</td>
            <td>Scotopic</td>
          </tr>
        <tr>
            <td valign=top>Orange-Green<br>
			606nm - 587nm - 567nm<br>&nbsp;            <!-- : 0.5425125516912 - 0.47710265908403 -->
            </td>
            <td valign=top style="background-color: #111; color: #ff0000;">Red cone</td>
            <td valign=top style="background-color: #111; color: #00ff00;">Green 2 cone<br>Green 1 cone</td>
            <td>Photopic</td>
          </tr>
        <tr>
            <td valign=top>Green 1 cone - Green 2 cone<br>
			570nm - 557nm - 532nm<br>&nbsp;            <!-- : 0.41504862822022 - 0.44930856206337 -->
            </td>
            <td valign=top style="background-color: #111; color: #ff6600;">Green 1 cone</td>
            <td valign=top style="background-color: #111; color: #00ff99;">Green 2 cone</td>
            <td>Photopic</td>
          </tr>
        <tr>
            <td valign=top>Wideband-Double cones<br>
			566nm - 487nm - 450nm<br>&nbsp;            <!-- : 2.4517879743933 - 0.62355435452903 -->
            </td>
            <td valign=top style="background-color: #111; color: #ffcc00;">Wideband cone</td>
            <td valign=top style="background-color: #111; color: #0099ff;">Double cone accessory<br>Double cone principal</td>
            <td>Photopic</td>
          </tr>
        <tr>
            <td valign=top>Lime-UV<br>
			567nm - 447nm - 374nm<br>&nbsp;            <!-- : 0.79892524400463 - 0.63499606797244 -->
            </td>
            <td valign=top style="background-color: #111; color: #ffff00;">Green 2 cone<br>Red cone<br>Green 1 cone<br>Wideband cone</td>
            <td valign=top style="background-color: #111; color: #0000ff;">Vio/UV cone</td>
            <td>Photopic</td>
          </tr>
        </table>
</div>
</div>


<div id="receptors">
<div class="tab">
  <button class="tablinks active" onclick="openTab(event, 'ops')">Photoreceptor Curves</button>
  <button class="tablinks" onclick="openTab(event, 'opp')">Opponency Curves</button>
  <button class="tablinks" onclick="openTab(event, 'dsc')">Wavelength Discrimination</button>
  <button class="tablinks" onclick="openTab(event, 'cie')">Chromaticity Diagram</button>
  <button class="tablinks" onclick="openTab(event, 'script')">Script Commands</button>
</div>

<div id="ops" class="tabcontent">
	<p id="pw1">Please wait...</p> 
	<img src="img/opsinimg.php?species_id=207" onload="window.setTimeout(function(){$('#pw1').hide();},53);">
</div>

<div id="opp" class="tabcontent">
	<p id="pw2">Please wait...</p> 
  <script>
  var oppimurl = 'img/opponimg.php?species_id=207';
  </script>
</div>

<div id="dsc" class="tabcontent">
	<p id="pw3">Please wait...</p> 
  <script>
  var dscimurl = 'img/discriminimg.php?species_id=207';
  </script>
</div>

<div id="cie" class="tabcontent">
	<p id="pw4">Please wait...</p> 
  <!-- p>WARNING: Beta.</p -->
  <script>
  var cieimurl = 'img/chromatimg.php?species_id=207';
  var modes = [			0, 			  ];
  var modenm = [		'Photopic', 			  ];
  openTab(false, 'ops');
  </script>
</div>

<div id="script" class="tabcontent">
<textarea style="width: 1050px; height: 400px;">
10001	t1	VSPLIT		Receptor,Rod,Cone
10002	t1	RCPMODE		Rod,1
10003	t1	TSPLIT		Cone,LWS cone,SWS cone
10004	t1	OPSIN		LWS cone,530
10005	t1	TSPLIT		SWS cone,MWS cone,SWS1 cone
10006	t1	OPSIN		SWS1 cone,380
10008	t1	TSPLIT		MWS cone,Rh2 cone,SWS2 cone
10009	t1	OPSIN		SWS2 cone,440
106382	t1	DSCOPP		643,SWS2 cone,SWS1 cone,Rod
106383	t1	DISCOPP		10003,Rh2 cone
106384	t1	CONNOPP		10003,+,Rh2 cone
106385	t1	DSCOPP		10005,Rh2 cone
106386	t1	CONNOPP		10008,+,LWS cone
106387	t1	DSCOPP		10008,SWS2 cone
106388	t1	DISCOPP		10008,Rh2 cone
106389	t1	CONNOPP		10008,-,Rh2 cone
106412	t1	NAMEOPP		643,Luminance (photopic)
106413	t1	NAMEOPP		10001,Luminance (scotopic)
106416	t1	DELOPP		106390
106418	t1	CONNdhgOPP	10003,+,LWS cone
106438	t1	NAMEOPP		10003,Yellow-Blue
106439	t1	NAMEOPP		10005,Blue-UV
106440	t1	NAMEOPP		10008,Red-Green
1335409	t1	RCPACU		Cone,2
1335410	t1	RCPACU		Rod,.5
10007	t478	RCPNAME		Rod-like,Rod
106626	t478	GRADLVL		50
1335402	t478	RCPACU		LWS cone,Rh2 cone,5
1335403	t478	RCPACU		SWS2 cone,SWS1 cone,1
1361559	t478	RCPACU		Rod,2
1561559	t478	RCPACU		Rod,2
106390	t159	VSPLIT		LWS cone,LWS cone,Double cone
106391	t159	SCRPIG		Double cone,408,445,150,2
106392	t159	DSCOPP		643,LWS cone,Rh2 cone
106393	t159	DSCOPP		10003,Double cone
106394	t159	DSCOPP		10008,Double cone
106630	t159	DISCOPP		10003,SWS1 cone
106673	t159	DELOPP		Luminance (photopic)2
106684	t159	DELOPP		106390Luminance (photopic)2
106685	t159	CONNOPP		10003,+,LWS cone
106373	t402	OPSIN		LWS cone,Double cone,565
106374	t402	PORPH		Double cone,LWS cone,Rh2 cone,SWS2 cone,SWS1 cone,Rod,0
106375	t402	SCRPIG		LWS cone,530,600,270,5
106376	t402	OPSIN		Rh2 cone,505
106377	t402	OPSIN		SWS2 cone,440
106378	t402	OPSIN		SWS1 cone,360
106379	t402	SCRPIG		Rh2 cone,475,535,200,3
106380	t402	SCRPIG		SWS2 cone,408,440,100,1
106381	t402	NOSCRPIG	SWS1 cone
106687	t5	DSCOPP		10003,SWS1 cone
106688	t5	DELOPP		106390Yellow-Blue2
106689	t5	RCPNAME		LWS cone,Red cone
106690	t5	RCPNAME		Rh2 cone,Green cone
106691	t5	RCPNAME		SWS2 cone,Blue cone
106692	t5	RCPNAME		SWS1 cone,Vio/UV cone
106728	t5	NAMEOPP		106390,Red-Green
106753	t5	COLOPP		10003,ff0,00f
106754	t5	COLOPP		10005,0ff,f0f
106755	t5	COLOPP		106390,f00,0f0
1351560	t419	ACUITY		8
106724	t19	SCRPIG		Red cone,530,600,0,25
106725	t19	SCRPIG		Green cone,475,535,0,15
106726	t19	SCRPIG		Blue cone,408,440,150,3
106727	t19	SCRPIG		Double cone,408,445,160,5
1351546	t19	ACUITY		6
1351559	t20	ACUITY		8
106705	t220	TSPLIT		Double cone,Double cone principal,Double cone accessory
106706	t220	OPSIN		Double cone accessory,403
106707	t220	SCRPIG		Double cone accessory,421,445,0,3
106708	t220	SCRPIG		Double cone principal,Wideband cone,411,431
106709	t220	OPSIN		Double cone principal,Red cone,566
106710	t220	TSPLIT		Green cone,Green 1 cone,Green 2 cone
106711	t220	OPSIN		Blue cone,0
106712	t220	TSPLIT		Red cone,Wideband cone
106713	t220	SCRPIG		Green 1 cone,536,561,0,10
106714	t220	SCRPIG		Green 2 cone,502,520,0,10
106715	t220	DELOPP		106705
106716	t220	DELOPP		106712
106717	t220	OPSIN		Green 1 cone,505
106718	t220	OPSIN		Green 2 cone,509
106719	t220	CONNOPP		10003,-,Vio/UV cone
106720	t220	CRE8OPP		Wideband-Double cones,+Wideband cone,-Double cone principal,-Double cone accessory
106721	t220	SCRPIG		Wideband cone,411,431
106722	t220	DSCOPP		106390,Wideband cone
106723	t220	SCRPIG		Red cone,557,589,0,20
1301	s207	OPSIN		Rod,502
1302	s207	OPSIN		Double cone principal,566
1303	s207	OPSIN		Red cone,566
1304	s207	OPSIN		Green 1 cone,505
1305	s207	OPSIN		Blue cone,0
1306	s207	OPSIN		Vio/UV cone,372
1351541	s207	COLOPP		106710,f60,0f9
1351542	s207	COLOPP		106720,fc0,09f
</textarea>
</div>

</div>


<div id="links">
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<h3>Notes and References:</h3>
Beason, R. C. & Loew, E. R. (2007) Visual pigment and oil droplet characteristics of the
bobolink (Dolichonyx oryzivorus), a new world migratory bird. <i>Vision Research 48</i> 1-8. <a href="https://doi.org/10.1016/j.visres.2007.10.006 " target="_cite">doi:10.1016/j.visres.2007.10.006 </a><br><br>Warrant E.J., Nilsson D.-E. (1998) Absorption of White Light in Photoreceptors. <i>Vision Res.</i>, Vol. 38, No. 2, pp. 195-207. PII: S0042-6989(97)00151-X <br><br>Stavenga D., Smits R.P., Hoenders B.J. (1993) Simple Exponential Functions Describing the Absorbance Bands of Visual Pigment Spectra. <i>Vision Res.</i> 33(8) pp. 1011-1017. <a href="https://doi.org/10.1016/0042-6989(93)90237-Q " target="_cite">doi:10.1016/0042-6989(93)90237-Q </a><br><br> <br><br>
<em>Note: Many species may have gaps in available data, which may be filled in with extrapolations from closely related species.
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