<!-- VSPLIT cloning Luminance... -->
<!-- VSPLIT omitting +Cone from Luminance2 and adding new recep instead. -->
<!-- Connecting +Rh2 cone to LWS cone - SWS cone -->
<!-- Connecting +LWS cone to Rh2 cone - SWS2 cone -->
<!-- Connecting -Rh2 cone to Rh2 cone - SWS2 cone -->
<!-- UNKNOWN OPCODE CONNDHGOPP in `finetune` -->
<!-- VSPLIT cloning Luminance (photopic)... -->
<!-- VSPLIT omitting +LWS cone from Luminance (photopic)2 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue... -->
<!-- VSPLIT omitting +LWS cone from Yellow-Blue2 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green... -->
<!-- VSPLIT omitting +LWS cone from Red-Green2 and adding new recep instead. -->
<!-- VSPLIT cloning Luminance (photopic)... -->
<!-- VSPLIT omitting +Rh2 cone from Luminance (photopic)2 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue... -->
<!-- VSPLIT omitting +Rh2 cone from Yellow-Blue2 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green... -->
<!-- VSPLIT omitting -Rh2 cone from Red-Green2 and adding new recep instead. -->
<!-- VSPLIT cloning Luminance (photopic)2... -->
<!-- VSPLIT omitting +Rh2 cone from Luminance (photopic)22 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue2... -->
<!-- VSPLIT omitting +Rh2 cone from Yellow-Blue22 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green2... -->
<!-- VSPLIT omitting -Rh2 cone from Red-Green22 and adding new recep instead. -->
<!-- DELOPP Luminance (photopic)2 -->
<!-- DELOPP Yellow-Blue2 -->
<!-- DELOPP Red-Green2 -->
<!-- DELOPP Luminance (photopic)2 -->
<!-- DELOPP Yellow-Blue2 -->
<!-- DELOPP Red-Green2 -->
<!-- DELOPP Luminance (photopic)22 -->
<!-- DELOPP Yellow-Blue22 -->
<!-- DELOPP Red-Green22 -->
<!-- Connecting +Double cone LWS to Yellow-Blue -->
<!-- Connecting +Double cone MWS to Yellow-Blue -->
<!-- Connecting +Double cone LWS to Luminance (photopic) -->
<!-- Connecting +Double cone MWS to Luminance (photopic) -->
<!-- VSPLIT cloning Luminance (photopic)... -->
<!-- VSPLIT omitting +DoubleP from Luminance (photopic)2 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue... -->
<!-- VSPLIT omitting +DoubleP from Yellow-Blue2 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green (double cones)... -->
<!-- VSPLIT omitting +DoubleP from Red-Green (double cones)2 and adding new recep instead. -->
<!-- VSPLIT cloning Double-Single cones... -->
<!-- VSPLIT omitting +DoubleP from Double-Single cones2 and adding new recep instead. -->
<!-- VSPLIT cloning Luminance (photopic)... -->
<!-- VSPLIT omitting +DoubleA from Luminance (photopic)2 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue... -->
<!-- VSPLIT omitting +DoubleA from Yellow-Blue2 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green (double cones)... -->
<!-- VSPLIT omitting -DoubleA from Red-Green (double cones)2 and adding new recep instead. -->
<!-- VSPLIT cloning Double-Single cones... -->
<!-- VSPLIT omitting +DoubleA from Double-Single cones2 and adding new recep instead. -->
<!-- VSPLIT cloning Luminance (photopic)2... -->
<!-- VSPLIT omitting +DoubleA from Luminance (photopic)22 and adding new recep instead. -->
<!-- VSPLIT cloning Yellow-Blue2... -->
<!-- VSPLIT omitting +DoubleA from Yellow-Blue22 and adding new recep instead. -->
<!-- VSPLIT cloning Red-Green (double cones)2... -->
<!-- VSPLIT omitting -DoubleA from Red-Green (double cones)22 and adding new recep instead. -->
<!-- VSPLIT cloning Double-Single cones2... -->
<!-- VSPLIT omitting +DoubleA from Double-Single cones22 and adding new recep instead. -->
<!-- DELOPP Luminance (photopic)2 -->
<!-- DELOPP Yellow-Blue2 -->
<!-- DELOPP Red-Green (double cones)2 -->
<!-- DELOPP Double-Single cones2 -->
<!-- DELOPP Luminance (photopic)2 -->
<!-- DELOPP Yellow-Blue2 -->
<!-- DELOPP Red-Green (double cones)2 -->
<!-- DELOPP Double-Single cones2 -->
<!-- DELOPP Luminance (photopic)22 -->
<!-- DELOPP Yellow-Blue22 -->
<!-- DELOPP Red-Green (double cones)22 -->
<!-- DELOPP Double-Single cones22 -->
<!-- Connecting +DoubleP to Yellow-Blue -->
<!-- Connecting +DoubleA to Yellow-Blue -->
<!-- Connecting +Double cone LWS to Luminance (photopic) -->
<!-- Connecting +Double cone MWS to Luminance (photopic) -->
<!-- Connecting +Double cone LWS to Yellow-Blue -->
<!-- Connecting +Double cone MWS to Yellow-Blue -->
<!-- DELOPPEQ Double-Single cones -->
<!-- Rod acuity times 0.51136363636364 is now 11.25. -->
<!-- LWS cone acuity times 0.51136363636364 is now 4.5. -->
<!-- DoubleP acuity times 0.51136363636364 is now 4.5. -->
<!-- DoubleA acuity times 0.51136363636364 is now 4.5. -->
<!-- Luminance (photopic) (643) has +LWS cone -->
<!-- oppoacup 4.5 from LWS cone -->
<!-- Luminance (photopic) (643) has +DoubleP -->
<!-- Luminance (photopic) (643) has +DoubleA -->
<!-- Luminance (photopic): Array
(
    [0] => 0
)
 -->
<!-- Luminance (photopic) mode = 0 -->
<!-- Luminance (photopic) acuity is 4.5 based on +4.5, -0 -->
<!-- Luminance (scotopic) (10001) has +Rod -->
<!-- oppoacup 11.25 from Rod -->
<!-- Luminance (scotopic): Array
(
    [0] => 1
)
 -->
<!-- Luminance (scotopic) mode = 1 -->
<!-- Luminance (scotopic) acuity is 11.25 based on +11.25, -0 -->
<!-- Yellow-Blue (10003) has +LWS cone -->
<!-- oppoacup 4.5 from LWS cone -->
<!-- Yellow-Blue (10003) has +DoubleP -->
<!-- Yellow-Blue (10003) has +DoubleA -->
<!-- Yellow-Blue: Array
(
    [0] => 0
)
 -->
<!-- Yellow-Blue mode = 0 -->
<!-- Yellow-Blue acuity is 4.5 based on +4.5, -0 -->
<!-- deleted Blue-UV no plusreceps -->
<!-- Red-Green (10008) has +LWS cone -->
<!-- oppoacup 4.5 from LWS cone -->
<!-- Red-Green: Array
(
    [0] => 0
)
 -->
<!-- Red-Green mode = 0 -->
<!-- Red-Green acuity is 4.5 based on +4.5, -0 -->
<!-- Red-Green (double cones) (106462) has +DoubleP -->
<!-- oppoacup 4.5 from DoubleP -->
<!-- Red-Green (double cones) (106462) has -DoubleA -->
<!-- oppoacum 4.5 from DoubleA -->
<!-- Red-Green (double cones): Array
(
    [0] => 0
)
 -->
<!-- Red-Green (double cones) mode = 0 -->
<!-- Red-Green (double cones) acuity is 4.5 based on +4.5, -4.5 -->
<!-- Double-Single cones (106468) has +DoubleP -->
<!-- oppoacup 4.5 from DoubleP -->
<!-- Double-Single cones (106468) has +DoubleA -->
<!-- Double-Single cones (106468) has -LWS cone -->
<!-- oppoacum 4.5 from LWS cone -->
<!-- Double-Single cones: Array
(
    [0] => 0
)
 -->
<!-- Double-Single cones mode = 0 -->
<!-- Double-Single cones acuity is 4.5 based on +4.5, -4.5 -->
<!-- deleted SWS2a cone - SWS2b cone no plusreceps -->
<!-- deleted  no plusreceps -->
<!-- deleted Red-Green (double cones) no plusreceps -->
<!-- deleted Double-Single cones no plusreceps -->
<!-- Opp Luminance (photopic) pl/ml ranges: 521, 0 -->
<!-- Opp Luminance (scotopic) pl/ml ranges: 501, 0 -->
<!-- unset Yellow-Blue: no minusrecep and not luminance -->
<!-- unset Red-Green: no minusrecep and not luminance -->
<!-- Opp Red-Green (double cones) pl/ml ranges: 603, 472 -->
<!-- Opp Double-Single cones pl/ml ranges: 542, 539 -->
<!-- red at 587 nm. -->
<!-- green at 499 nm. -->
<!-- double at 542 nm. -->
<!-- singlecones at 537 nm. -->
<!-- Photopic: 0 [, Yellow-Aqua (double cones), Double-Single cones, ] -->
<!-- Scotopic: 1 [, ] -->
<html>
<head> 
<meta charset="UTF-8">
<title>AVIAN - Shanny (Lipophrys pholis)</title>
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    {
        if (urlparams[i].substr(0,4)                   // Assuming no polymorphisms of 10 or more genes.
            != 'pm'+recep+'=')
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<a href='index.php'><img align="left" src="img/logo.png"><span class="red">A</span><span class="green">V</span><span class="blue">I</span><span class="purple">A</span><span class="orange">N</span></a></h1>
<h4 id="subtitle">Animal Vision Interactive Analyzer</h4>
</div>

<div id="menu">

<ul>
	<li>Major Taxa
		<ul>
			<li><a href="index.php?node=0&id=739">Animalia</a></li>
<li><a href="index.php?node=26&id=739">Chelicerata</a></li>
<li><a href="index.php?node=34&id=739">Eumalacostraca</a></li>
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<li><a href="index.php?node=15&id=739">Insecta</a></li>
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	<li>Recents
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			<li><a href="species.php?id=739">Shanny&nbsp;(Lipophrys&nbsp;pholis)</a></li>
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<span id="opfisehciet"><br><br>&nbsp;</span>

</div>

<br><br><br>
<!-- Luminance (photopic): plmax 525(521); zero 0; mlmax 0(0) -->
<!-- Luminance (scotopic): plmax 515(501); zero 0; mlmax 0(0) -->
<!-- Double-Single cones: plmax 618(542); zero 587; mlmax 545(537) -->
<!-- Yellow-Aqua (double cones): plmax 584(587); zero 537; mlmax 489(499) -->
<div id="specieshdr">
<h3>Shanny (<i>Lipophrys pholis</i>)</h3>

<p><!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '389' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '459' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '457' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '153' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '455' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '134' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '448' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '444' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '127' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '442' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '2' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '478' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '1' -->
<!-- SELECT `name`, `parent_id` pi FROM `taxon` WHERE `taxon_id` = '0' -->
Containing taxa: <a href="index.php?node=0">Animalia</a> &raquo; <a href="index.php?node=1">Chordata</a> &raquo; <a href="index.php?node=478">Osteichthyes</a> &raquo; <a href="index.php?node=2">Actinopterygii</a> &raquo; <a href="index.php?node=442">Neopterygii</a> &raquo; <a href="index.php?node=127">Teleostei</a> &raquo; <a href="index.php?node=444">Euteleostei</a> &raquo; <a href="index.php?node=448">Neoteleostei</a> &raquo; <a href="index.php?node=134">Acanthomorpha</a> &raquo; <a href="index.php?node=455">Acanthopterygii</a> &raquo; <a href="index.php?node=153">Percomorpha</a> &raquo; <a href="index.php?node=457">Carangimorpharia</a> &raquo; <a href="index.php?node=459">Ovalentariae</a> &raquo; <a href="index.php?node=389">Blenniiformes</a> &raquo; <a href="index.php?node=390">Blenniidae</a></p>


</div>

<div id="opsinopp">
<div id="opsins">
Photoreceptors:
<table cellpadding="0" cellspacing="0" width="503">
    <tr class="tblheader">
        <td width=40%>Receptor</td>
        <td width=20%>Opsin&nbsp;&lambda;max</td>
        <td width=20%>Filter&nbsp;&lambda;max</td>
        <td width=20%>Filter&nbsp;&lambda;50%</td>
        <td width=20%>Recep.&nbsp;&lambda;max</td>
    </tr>
<tr><td nowrap>DoubleP</td><td>570nm</td><td>&nbsp;</td><td>&nbsp;</td><td>570nm</td></tr>
<tr><td nowrap>LWS cone</td><td>535nm</td><td>&nbsp;</td><td>&nbsp;</td><td>535nm</td></tr>
<tr><td nowrap>Rod</td><td>515nm</td><td>&nbsp;</td><td>&nbsp;</td><td>515nm</td></tr>
<tr><td nowrap>DoubleA</td><td>500nm</td><td>&nbsp;</td><td>&nbsp;</td><td>500nm</td></tr>
</table>

<!-- acria petuar -->
</div>

<br><br>

<div id="opponents">
Opponent processes:
<table cellpadding="0" cellspacing="0" width="503">
    <tr class="tblheader">
        <td width=40%>Description</td>
        <td width=25%>(+) Terminus</td>
        <td width=25%>(-) Terminus</td>
        <td width=10%>Mode</td>
    </tr>
<tr>
            <td valign=top>Luminance (photopic)<br>
			            <!-- : 1.4276706086206 - 1 -->
            </td>
            <td valign=top style="background-color: #111; color: #ffffff;">LWS cone<br>DoubleP<br>DoubleA</td>
            <td valign=top style="background-color: #111; color: #000000;">&nbsp;</td>
            <td>Photopic</td>
          </tr>
        <tr>
            <td valign=top>Luminance (scotopic)<br>
			            <!-- : 1.1247735208745 - 1 -->
            </td>
            <td valign=top style="background-color: #111; color: #ffffff;">Rod</td>
            <td valign=top style="background-color: #111; color: #000000;">&nbsp;</td>
            <td>Scotopic</td>
          </tr>
        <tr>
            <td valign=top>Double-Single cones<br>
			618nm - 587nm - 545nm<br>&nbsp;            <!-- : 8.573320228681 - 4.1849826972234 -->
            </td>
            <td valign=top style="background-color: #111; color: #ff00ff;">DoubleP<br>DoubleA</td>
            <td valign=top style="background-color: #111; color: #00ff00;">LWS cone</td>
            <td>Photopic</td>
          </tr>
        <tr>
            <td valign=top>Yellow-Aqua (double cones)<br>
			584nm - 537nm - 489nm<br>&nbsp;            <!-- : 1.537292965349 - 1.5303918729728 -->
            </td>
            <td valign=top style="background-color: #111; color: #ff9900;">DoubleP</td>
            <td valign=top style="background-color: #111; color: #0099ff;">DoubleA</td>
            <td>Photopic</td>
          </tr>
        </table>
</div>
</div>


<div id="receptors">
<div class="tab">
  <button class="tablinks active" onclick="openTab(event, 'ops')">Photoreceptor Curves</button>
  <button class="tablinks" onclick="openTab(event, 'opp')">Opponency Curves</button>
  <button class="tablinks" onclick="openTab(event, 'dsc')">Wavelength Discrimination</button>
  <button class="tablinks" onclick="openTab(event, 'cie')">Chromaticity Diagram</button>
  <button class="tablinks" onclick="openTab(event, 'script')">Script Commands</button>
</div>

<div id="ops" class="tabcontent">
	<p id="pw1">Please wait...</p> 
	<img src="img/opsinimg.php?species_id=739" onload="window.setTimeout(function(){$('#pw1').hide();},53);">
</div>

<div id="opp" class="tabcontent">
	<p id="pw2">Please wait...</p> 
  <script>
  var oppimurl = 'img/opponimg.php?species_id=739';
  </script>
</div>

<div id="dsc" class="tabcontent">
	<p id="pw3">Please wait...</p> 
  <script>
  var dscimurl = 'img/discriminimg.php?species_id=739';
  </script>
</div>

<div id="cie" class="tabcontent">
	<p id="pw4">Please wait...</p> 
  <!-- p>WARNING: Beta.</p -->
  <script>
  var cieimurl = 'img/chromatimg.php?species_id=739';
  var modes = [			0, 			  ];
  var modenm = [		'Photopic', 			  ];
  openTab(false, 'ops');
  </script>
</div>

<div id="script" class="tabcontent">
<textarea style="width: 1050px; height: 400px;">
10001	t1	VSPLIT		Receptor,Rod,Cone
10002	t1	RCPMODE		Rod,1
10003	t1	TSPLIT		Cone,LWS cone,SWS cone
10004	t1	OPSIN		LWS cone,530
10005	t1	TSPLIT		SWS cone,MWS cone,SWS1 cone
10006	t1	OPSIN		SWS1 cone,380
10008	t1	TSPLIT		MWS cone,Rh2 cone,SWS2 cone
10009	t1	OPSIN		SWS2 cone,440
106382	t1	DSCOPP		643,SWS2 cone,SWS1 cone,Rod
106383	t1	DISCOPP		10003,Rh2 cone
106384	t1	CONNOPP		10003,+,Rh2 cone
106385	t1	DSCOPP		10005,Rh2 cone
106386	t1	CONNOPP		10008,+,LWS cone
106387	t1	DSCOPP		10008,SWS2 cone
106388	t1	DISCOPP		10008,Rh2 cone
106389	t1	CONNOPP		10008,-,Rh2 cone
106412	t1	NAMEOPP		643,Luminance (photopic)
106413	t1	NAMEOPP		10001,Luminance (scotopic)
106416	t1	DELOPP		106390
106418	t1	CONNdhgOPP	10003,+,LWS cone
106438	t1	NAMEOPP		10003,Yellow-Blue
106439	t1	NAMEOPP		10005,Blue-UV
106440	t1	NAMEOPP		10008,Red-Green
1335409	t1	RCPACU		Cone,2
1335410	t1	RCPACU		Rod,.5
10007	t478	RCPNAME		Rod-like,Rod
106626	t478	GRADLVL		50
1335402	t478	RCPACU		LWS cone,Rh2 cone,5
1335403	t478	RCPACU		SWS2 cone,SWS1 cone,1
1361559	t478	RCPACU		Rod,2
1561559	t478	RCPACU		Rod,2
10109	t2	OPSIN		LWS cone,620
10110	t2	PORPH		LWS cone,Rh2 cone,SWS2 cone,SWS1 cone,Rod,1
10114	t2	OPSIN		Rh2 cone,525
106435	t2	RCPNAME		LWS cone,Double cone LWS
106436	t2	RCPNAME		Rh2 cone,Double cone MWS
106437	t2	OPSIN		Double cone,0
106449	t127	VSPLIT		Double cone LWS,Double cone LWS,LWS cone
106453	t127	VSPLIT		Double cone MWS,Double cone MWS,Rh2 cone
106454	t127	DELOPP		106449,106453
106461	t127	CONNOPP		10003,+,Double cone LWS,Double cone MWS
106462	t127	CRE8OPP		Red-Green (double cones),+Double cone LWS,-Double cone MWS
106468	t127	CRE8OPP		Double-Single cones,+Double cone LWS,+Double cone MWS,-LWS cone,-Rh2 cone
106514	t127	CONNOPP		643,+,Double cone LWS,Double cone MWS
106520	t448	PORPHCNV	DoubleP,DoubleA,Double cone LWS,Double cone MWS,LWS cone,Rh2 cone,SWS2 cone,SWS1 cone,Rod,0
106457	t455	VSPLIT		Double cone LWS,Double cone LWS,DoubleP
106458	t455	VSPLIT		Double cone MWS,Double cone MWS,DoubleA
106459	t455	DELOPP		106457,106458
106467	t455	CONNOPP		10003,+,DoubleP,DoubleA
106499	t455	TSPLIT		SWS2 cone,SWS2a cone,SWS2b cone
106500	t455	OPSIN		SWS2b cone,415
106516	t455	CRE8OPP		Red-Green (double cones),+Double cone LWS,-Double cone MWS
106517	t455	CONNOPP		643,+,Double cone LWS,Double cone MWS
106519	t455	CONNOPP		10003,+,Double cone LWS,Double cone MWS
106527	t455	CRE8OPP		Double-Single cones,+Double cone LWS,+Double cone MWS,-LWS cone,-Rh2 cone
1351524	t455	DELOPPEQ	106527
106552	t390	OPSIN		Double cone LWS,Double cone MWS,0
4175	s739	OPSIN		DoubleP,570
4176	s739	OPSIN		DoubleA,500
4177	s739	OPSIN		LWS cone,535
4178	s739	OPSIN		Rh2 cone,0
4179	s739	OPSIN		SWS2a cone,SWS2b cone,0
4180	s739	OPSIN		SWS1 cone,0
4181	s739	OPSIN		Rod,515
6214	s739	PORPH		Double cone LWS,0
6215	s739	PORPH		Double cone MWS,0
6216	s739	PORPH		LWS cone,0
6217	s739	PORPH		Rh2 cone,0
6218	s739	PORPH		SWS2 cone,0
6219	s739	PORPH		SWS1 cone,0
6220	s739	PORPH		Rod,0
106553	s739	OPPCOLOR	Red-Green (double cones),FF9900,0099FF
106554	s739	OPPCOLOR	Double-Single cones,FF00FF,00FF00
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<h3>Notes and References:</h3>
Loew ER, Lythgoe JN (1977)
The Ecology of Cone Pigments in Teleost Fishes.
<i>Vision Research</i> 18:715-722 <br><br>Warrant E.J., Nilsson D.-E. (1998) Absorption of White Light in Photoreceptors. <i>Vision Res.</i>, Vol. 38, No. 2, pp. 195-207. PII: S0042-6989(97)00151-X <br><br>Stavenga D., Smits R.P., Hoenders B.J. (1993) Simple Exponential Functions Describing the Absorbance Bands of Visual Pigment Spectra. <i>Vision Res.</i> 33(8) pp. 1011-1017. <a href="https://doi.org/10.1016/0042-6989(93)90237-Q " target="_cite">doi:10.1016/0042-6989(93)90237-Q </a><br><br> <br><br>
<em>Note: Many species may have gaps in available data, which may be filled in with extrapolations from closely related species.
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